Table 3.
Overview of genes that are differentially expressed in the L. plantarum strain harboring pNZ7026 when compared to the control strain (pNZ7021)
| Continuous culture | Batch culture | ||||
|---|---|---|---|---|---|
| Synonyms | Sub class | log2 ratio | Holmes sign. | log2 ratio | Holmes sign. |
| rhe1 | ATP dependent RNA helicase | -0.38 | 1.00 | -1.59 | 0.07 |
| mtsC | Cations | 1.33 | 0.00 | -0.01 | 1.00 |
| mtsB | Cations | 1.43 | 0.00 | -0.02 | 1.00 |
| mtsA | Cations | 1.46 | 0.00 | -0.07 | 1.00 |
| pyrP | Nucleoside, purines and pyrimidines | 0.19 | 1.00 | 1.89 | 0.02 |
| Lp_2696 | Conserved: membrane proteins | 0.04 | 1.00 | 1.32 | 0.07 |
| pyre | Pyrimidine ribonucleotide biosynthesis | 0.15 | 1.00 | 2.84 | 0.07 |
| pyrF | Pyrimidine ribonucleotide biosynthesis | 0.14 | 1.00 | 2.73 | 0.01 |
| pyrD | Pyrimidine ribonucleotide biosynthesis | 0.14 | 1.00 | 2.75 | 0.00 |
| pyrAB | Pyrimidine ribonucleotide biosynthesis | 0.11 | 1.00 | 2.74 | 0.00 |
| pyrC | Pyrimidine ribonucleotide biosynthesis | 0.14 | 1.00 | 3.04 | 0.00 |
| pyrB | Pyrimidine ribonucleotide biosynthesis | 0.08 | 1.00 | 2.88 | 0.00 |
| pyrR1 | Other | -0.06 | 1.00 | 2.01 | 0.00 |
| ansB | Glutamate familiy | -0.16 | 1.00 | -1.37 | 0.08 |
| mntH2 | Cations | 1.28 | 0.00 | 0.45 | 1.00 |
| folP | Folate biosynthesis | -5.50 | 0.00 | -5.86 | 0.00 |
| Xtp2 | Folate biosynthesis | -5.31 | 0.00 | -6.28 | 0.00 |
| folC2 | Folate biosynthesis | -5.85 | 0.00 | -6.44 | 0.00 |
| folE | Folate biosynthesis | -5.36 | 0.00 | -6.41 | 0.00 |
| folK | Folate biosynthesis | -5.80 | 0.00 | -6.47 | 0.00 |
| folB | Folate biosynthesis | -5.54 | 0.00 | -6.21 | 0.00 |
| Lp_3412 | Cell surface proteins: other | -1.53 | 0.01 | -0.28 | 1.00 |
| Lp_3413 | Cell surface proteins: other | -1.93 | 0.00 | -0.37 | 1.00 |
| Lp_3414 | Cell surface proteins: other | -2.10 | 0.00 | -0.43 | 1.00 |
| Lp_3415 | Other | -1.17 | 0.00 | -0.72 | 0.72 |