Table 1.
Oligonucleotide primers and probes for detection of S. pneumoniae, H. influenzae and N. meningitidis.
| Sequence (5' to 3')a | Positions in target gene | |
|---|---|---|
| S. pneumoniae | ||
| Spn9802 F | 5'-A GTC GTT CCA AGG TAA CAA GTC T-3' | 3370-3392 |
| Spn9802 R | 5'-AC CAA CTC GAC CAC CTC TTT-3' | 3525-3506 |
| Spn9802 FAM | 5'-FAM-aTc AGa TTg CTg ATa AAa CgA-BHQ1-'3 | |
| H. influenzae | ||
| Hi P6 F | 5'-CCA GCT GCT AAA GTA TTA GTA GAA G-3' | 302-326 |
| Hi P6 R | 5'-TTC ACC GTA AGA TAC TGT GCC-3' | 477-457 |
| Hi P6 JOE | 5'-JOE- CAg ATg CAg TTg AAg GTt Att tAG-BHQ1-'3 | |
| N. meningitidis | ||
| ctrA F | 5'-GCTGCGGTAGGTGGTTCAA-3' | 617-635 |
| ctrA R | 5'-TTGTCGCGGATTTGCAACTA-3' | 727-708 |
| ctrA ROX | 5'-ROX-CATTGCCACGTGTCAGCTGCACAT- BHQ1-'3 |
a Positions with lower case letters indicate locked nucleic acid [27].