Table 1.
Consistency indexes between pairs of tags
| 1 | 3 | 7 | 8 | 9 | 10 | 11 | 14 | 23 | 24 | 2 | 4 | 5 | 6 | 12 | 15 | 16 | 19 | 22 | |
| 1 | 96% | 94% | 95% | 95% | 95% | 95% | 94% | 96% | 96% | 28% | 26% | 23% | 26% | 25% | 24% | 25% | 22% | 22% | |
| 3 | 96% | 95% | 97% | 96% | 96% | 95% | 100% | 98% | 97% | 26% | 53% | 44% | 50% | 52% | 49% | 49% | 47% | 49% | |
| 7 | 94% | 95% | 95% | 97% | 96% | 97% | 98% | 95% | 97% | 25% | 45% | 43% | 45% | 52% | 51% | 52% | 50% | 55% | |
| 8 | 95% | 97% | 95% | 97% | 93% | 96% | 100% | 98% | 97% | 26% | 46% | 46% | 46% | 52% | 53% | 55% | 50% | 50% | |
| 9 | 95% | 96% | 97% | 97% | 98% | 95% | 100% | 98% | 99% | 26% | 44% | 47% | 44% | 54% | 53% | 56% | 51% | 55% | |
| 10 | 95% | 96% | 96% | 93% | 98% | 91% | 100% | 98% | 96% | 26% | 44% | 46% | 45% | 48% | 47% | 47% | 42% | 49% | |
| 11 | 95% | 95% | 97% | 96% | 95% | 91% | 98% | 97% | 97% | 24% | 45% | 48% | 45% | 49% | 49% | 48% | 47% | 47% | |
| 14 | 94% | 100% | 98% | 100% | 100% | 100% | 98% | 100% | 100% | 25% | 24% | 40% | 32% | 30% | 31% | 36% | 36% | 31% | |
| 23 | 96% | 98% | 95% | 98% | 98% | 98% | 97% | 100% | 97% | 27% | 46% | 44% | 47% | 47% | 61% | 51% | 48% | 56% | |
| 24 | 96% | 97% | 97% | 97% | 99% | 96% | 97% | 100% | 97% | 25% | 44% | 49% | 43% | 44% | 57% | 52% | 55% | 55% | |
| 2 | 28% | 26% | 25% | 26% | 26% | 26% | 24% | 25% | 27% | 25% | 94% | 94% | 95% | 94% | 96% | 94% | 95% | 94% | |
| 4 | 26% | 53% | 45% | 46% | 44% | 44% | 45% | 24% | 46% | 44% | 94% | 98% | 97% | 97% | 97% | 99% | 98% | 98% | |
| 5 | 23% | 44% | 43% | 46% | 47% | 46% | 48% | 40% | 44% | 49% | 94% | 98% | 96% | 95% | 97% | 97% | 97% | 97% | |
| 6 | 26% | 50% | 45% | 46% | 44% | 45% | 45% | 32% | 47% | 43% | 95% | 97% | 96% | 96% | 96% | 97% | 97% | 96% | |
| 12 | 25% | 52% | 52% | 52% | 54% | 48% | 49% | 30% | 47% | 44% | 94% | 97% | 95% | 96% | 97% | 99% | 99% | 97% | |
| 15 | 24% | 49% | 51% | 53% | 53% | 47% | 49% | 31% | 61% | 57% | 96% | 97% | 97% | 96% | 97% | 94% | 98% | 94% | |
| 16 | 25% | 49% | 52% | 55% | 56% | 47% | 48% | 36% | 51% | 52% | 94% | 99% | 97% | 97% | 99% | 94% | 98% | 95% | |
| 19 | 22% | 47% | 50% | 50% | 51% | 42% | 47% | 36% | 48% | 55% | 95% | 98% | 97% | 97% | 99% | 98% | 98% | 97% | |
| 22 | 22% | 49% | 55% | 50% | 55% | 49% | 47% | 31% | 56% | 55% | 94% | 98% | 97% | 96% | 97% | 94% | 95% | 97% | |
| Counts | 3,460 | 3,196 | 3,994 | 4,815 | 3,249 | 3,852 | 4,565 | 624 | 2,705 | 2,833 | 1,406 | 6,049 | 2,713 | 3,729 | 4,299 | 3,202 | 3,561 | 3,026 | 2,722 |
For a given pair of tags, consider all SNP positions detected by next_phred that are supported by three or more reads of mapping score ≥100 from each tag in the pair. The pair-wise consistency index is defined as the percentage of such SNP positions where the same nucleotide (C, G, A, or T) is found to have the highest frequency in each of the two tags. The bottom row displays the accumulated count for a tag used in the pair-wise comparison.