Table 1.
miRNA Target Prediction Results on All Putative and Select Resequenced 3′-UTRs
| All 731 Putative 3′-UTRs |
130 Resequenced 3′-UTRs |
|||||
| All (731 UTRs) | Conserved Targets (481 UTRs) | Nonconserved Targets (481 UTRs) | All (130 UTRs) | Conserved Targets (124 UTRs) | Nonconserved Targets (124 UTRs) | |
| Number of targets predicted | 6,299 | 875 | 3,307 | 1,296 | 360 | 639 |
| Number of targets (per 3′-UTR) | 8.62 | 1.82 | 6.88 | 9.97 | 2.90 | 5.15 |
| Total coverage of targets (nt) | 39,660 | 5,505 | 21,157 | 6,602 | 2,159 | 4,089 |
| 3′UTR coverage by targets (%) | 13.0 | 2.7 | 10.5 | 13.7 | 4.76 | 9.01 |
| Informative sites within targetsa (nt) | 17,607 | 2,761 | 9,355 | 6,602 | 2,159 | 4,089 |
| Number of SNPs in targets | 78 | 8 | 40 | 40 | 7 | 29 |
| SNP density in targets (%) | 0.443 | 0.290 | 0.428 | 0.606 | 0.324 | 0.709 |
a
Only a subset of 3′-UTR positions had multispecies sequence data to determine polymorphism.