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. Author manuscript; available in PMC: 2011 Oct 1.
Published in final edited form as: Proteomics. 2010 Oct;10(19):3515–3524. doi: 10.1002/pmic.200900727

Table 3.

The descriptive statistics for best feature set for each classifier using cross-validation (CV) and independent validation set (IV) and features used in best classifiers.

Type of classifier AUC, CV PPV, CV AUC, IV PPV, IV features
Naïve Bayes 0.966 0.972 0.928 0.913 mzmax, S, NnoID
ANN 0.970 0.965 0.923 0.903 n, σ, mzmax, Itot,, S, NnoID, IyIons,, INL
Logistic regression 0.968 0.964 0.922 0.907 n, mzImax, mzmax, Itot, Ibal, S, NnoID, IyIons, NNL, NoIDnL
Random forest 0.978 0.965 0.880 0.887 n, σ, mzImax, mzmax, Itot, Ibal, S, NnoID, IbIons, NNL
Decision tree 0.938 0.961 0.855 0.884 n, S, NnoID