Table 4.
Average log-odd ratios for two binding sites to be co-localized
Homodimer | Heterodimer | Peptide | S.Peptide | DNA | RNA | Ligand | Solvent | |
---|---|---|---|---|---|---|---|---|
Homodimer | 0.12 | 0.13 | −0.35 | −0.30 | −0.02 | −0.60 | −0.09 | 0.02 |
Heterodimer | 0.13 | 0.79 | 0.63 | 0.09 | −0.85 | 0.12 | −0.06 | |
Peptide | −0.35 | 0.79 | −0.02 | 0.84 | −0.09 | −0.23 | ||
S.Peptide | −0.30 | 0.63 | 0.84 | 0.30 | −0.15 | |||
DNA | −0.02 | 0.09 | 0.34 | 0.63 | −0.12 | |||
RNA | −0.60 | −0.85 | 2.37 | 0.43 | 0.04 | |||
Ligand | −0.09 | 0.12 | −0.09 | 0.30 | 0.63 | 0.43 | −1.56 | 0.15 |
Solvent | 0.02 | −0.06 | −0.23 | −0.15 | −0.12 | 0.04 | 0.15 | −0.01 |
Each cell corresponds to the log-odd ratio of the observed probability of having a binding site type A overlapping a binding site type B over the expected probability of having A and B overlapping. Positive values indicate favorable overlapping/polyvalence between the binding site types A and B, whereas negative values indicate unfavorable overlapping/polyvalence. Empty cells are unsolved values due to an insufficient number of overlaps between the two considered binding sites; however, they should indicate low log-odd values.