Table 1.

Precision obtained with PACMIT using different folding schemes

Method	Precisiona
	Fruit fly*,b	Fruit flyc	Human*,b	Humanc
PACMIT-0.0	0.900	0.900	0.483	0.483
PACMIT-0.1	0.923	0.900	0.469	0.486
PACMIT-0.2	0.947	0.923	0.466	0.493
PACMIT-0.3	0.947	0.900	0.414	0.483
PACMIT-0.4	0.923	0.878	N.A.	0.449
PACMIT-0.5	N.A.d	0.860	N.A.	0.424
PACMIT-MFES	0.923	0.923	0.405	0.405

^aPrecision obtained for the same sensitivity as that obtained by PACMIT-MFES, i.e. SE = 0.263 for the fruit fly and SE = 0.085 for the human.

^bUsing RNAplfold with global folding (W = L = l).

^cUsing RNAplfold with local folding (W = 80 and L = 40).

^dNot available for the sensitivity cutoff.

*Used here and in the main text to denote global folding.