Table 4.
FAE1 polymorphisms between A and C genomes
| No. | Positions | Nucleotide Differences Between A and C Genomes | Amino acid difference | Restriction Enzymes |
|---|---|---|---|---|
| 1 | 63a | C Tb | C21=c | |
| 2 | 72 | G A | P24= | AccI, HindII, HpaI, MjaIV, TspGWI |
| 3 | 168 | C T | I56= | BsrDI, BccI, BtgZI |
| 4 | 312 | T C | Y104= | |
| 5 | 363 | G C | S121= | EcoRII, ScrFI, Hpy99I |
| 6 | 417 | T C | T139= | DsaI, SecI |
| 7 | 531 | C T | N177= | AclI, MaeII |
| 8 | 591 | A T | P197= | BccI, BtgZI |
| 9 | 856 | G A | G286R | Eco57MI, EcoRII, GsuI, ScrFI |
| 10 | 1036 | T C | L346= | BseYI, AclI, MaeII |
| 11 | 1113 | T C | D371= | |
| 12 | 1128 | C T | Y376= | |
| 13 | 1140 | T C | D380= | |
| 14 | 1146 | A G | K382= | AluI, Cac8I, CviJI, HindIII |
| 15 | 1155 | T C | I385= | TaqI |
| 16 | 1184 | G A | R395K | |
| 17 | 1217 | C G | A406G | AvrII, HaeIII, SecI, StuI, StyI |
| 18 | 1464 | G C | V488= | MseI, Hin4I |
a63 indicates the position 63 bp from the base 'A' in the start codon.
bThe first base is in the A genome and the second is in the C genome.
cC21 = indicates no change in the amino acid (synonymous variation)