Table 1.
GOSLIM categorization in biological processes of genes expressed at reduced levels in AtGRP7-ox plants.
| n genes selection |
expected frequencies |
log enrichments |
p values enriched |
p values depleted |
|
|---|---|---|---|---|---|
| other physiological processes | 22 | 22.4 | -0.025 | 1 | 1 |
| response to stress | 15 | 5.2 | 1.517 | 1.14E-03 | 1 |
| response to abiotic or biotic stimulus | 16 | 7.1 | 1.186 | 1.05E-02 | 1 |
| signal transduction | 3 | 6.2 | -1.045 | 1 | 1 |
| other cellular processes | 2 | 7.4 | -1.884 | 1 | 0.297 |
| other biological processes | 12 | 13.8 | -0.202 | 1 | 1 |
| biological process unknown | 63 | 68.8 | -0.128 | 1 | 1 |
| other metabolic processes | 59 | 53.1 | 0.153 | 1 | 1 |
| developmental processes | 4 | 5.1 | -0.349 | 1 | 1 |
| cell organization and biogenesis | 4 | 4.0 | -0.007 | 1 | 1 |
| transcription | 10 | 12.2 | -0.282 | 1 | 1 |
| protein metabolism | 21 | 23.8 | -0.183 | 1 | 1 |
| DNA or RNA metabolism | 3 | 4.3 | -0.524 | 1 | 1 |
| transport | 16 | 12.4 | 0.369 | 1 | 1 |
| electron transport or energy pathways | 7 | 8.3 | -0.248 | 1 | 1 |