Table 1.

Summary of A. pompejan a cDNA libraries and assemblies

	CloneMiner		Oligo-capping		Global assembly
	Whole animal	Pygidium	Ventral tissue	Gills
Initial chromatograms	20,549	36,648	16,411	26,569	100,177
Clean sequences	19,739 (96%)	25,419 (69%)	12,871 (78%)	18,105 (68%)	76,134 (76%)
3' poly(A) (%)	1,599 (8%)	3,156 (12%)	5,465 (43%)	1,467 (8%)	11,687 (15%)
Mean length (bp)	633	610	720	776	674
Unigenes after assembly	5,425	8,682	2,831	3,760	15,858
Contigs	1,365	2,327	917	1,193	4,993
Singletons	4,060	6,355	1,914	2,567	10,865
Contig mean length (bp)	993	951	852	931	1,017