Table 1.
BLAST statistics against three fish genome assemblies.
| # BACs one end | # BACs both ends | Sequences w/hit | BACs w/hit | Type 1* | Type 2* | Type 3* | Type 4* | 3/(2+3) | (3+4)/(2+3+4) | |
|---|---|---|---|---|---|---|---|---|---|---|
| Stickleback | ||||||||||
| Genoscope | 6,734 | 30,649 | 11,229 | 10,048 | 7,987 | 797 | 54 | 153 | 0.063 | 0.206 |
| Broad | 12,758 | 56,118 | 21,754 | 19,510 | 14,405 | 1,416 | 142 | 633 | 0.054 | 0.286 |
| Combined | 19,492 | 86,767 | 33,053 | 29,558 | 22,392 | 2,213 | 196 | 786 | 0.057 | 0.259 |
| Medaka | ||||||||||
| Genoscope | 6,734 | 30,649 | 9,764 | 9,278 | 7,087 | 469 | 43 | 226 | 0.084 | 0.364 |
| Broad | 12,758 | 56,118 | 19,699 | 17,943 | 13,907 | 886 | 51 | 624 | 0.054 | 0.432 |
| Combined | 19,492 | 86,767 | 29,463 | 27,221 | 20,994 | 1,355 | 94 | 850 | 0.065 | 0.410 |
| Tetraodon | ||||||||||
| Genoscope | 6,734 | 30,649 | 6,931 | 6,386 | 3,879 | 265 | 14 | 62 | 0.050 | 0.222 |
| Broad | 12,758 | 56,118 | 14,260 | 13,227 | 7,279 | 503 | 19 | 188 | 0.036 | 0.291 |
| Combined | 19,492 | 86,767 | 21,191 | 19,613 | 11,158 | 768 | 33 | 250 | 0.041 | 0.269 |
*Numbers for type 1, 2, 3 & 4 do not include hits to the contigs in the 'unordered chromosome' of each genome assembly. Type 2 hits were scored when the two end sequences of a clone hit within 300 kb of each other in the target genome.