Table 4.

Changes in transcripts for transcription factors from somites only between Pax3-GFP/+ samples from gain of function Pax3PAX3-FKHR/GFP and control Pax3GFP/+ embryos: UP (bold), DOWN (italics), FC (fold change)

Gene Title	Gene Symbol	FC somites
paired-like homeodomain transcription factor 2	Pitx2	3.00
ladybird homeobox homolog 1	Lbx1	2.67
trans-acting transcription factor 5	Sp5	2.55
zinc finger protein 568	Zfp568	2.46
inhibitor of DNA binding 4	Id4	2.39
fos-like antigen 2	Fosl2	2.34
Kruppel-like factor 4	Klf4	2.28
nuclear receptor subfamily 4, group A, member 3	Nr4a3	2.26
doublesex and mab-3 related transcription factor like family A2	Dmrta2	1.86
inhibitor of DNA binding 2	Id2	1.82
ISL1 transcription factor, LIM/homeodomain	Isl1	1.75
Kruppel-like factor 11	Klf11	1.60
inhibitor of DNA binding 1	Id1	1.57
zinc finger, CCHC domain containing 12	Zcchc12	1.55
zinc finger, MYND domain containing 11	Zmynd11	1.54
LIM homeobox protein 2	Lhx2	1.54
transcription factor AP-2 beta	Tcfap2b	1.50
basonuclin 2	Bnc2	1.45
doublesex and mab-3 related transcription factor 2	Dmrt2	1.45
mohawk homeobox	Mkx	1.43
histone cluster 2, H3c1	Hist2h3c1	-1.42
nuclear receptor co-repressor 2	Ncor2	-1.43
forkhead box C1	Foxc1	-1.45
runt-related transcription factor 1; translocated to 1	Runx1t1	-1.46
homeo box C8	Hoxc8	-1.47
zinc finger and BTB domain containing 16	Zbtb16	-1.47
similar to COUP-TFI/nuclear receptor subfamily 2, group F, member 1	Nr2f1	-1.47
T-box 22	Tbx22	-1.47
homeo box C5	Hoxc5	-1.51
homeo box C6	Hoxc6	-1.51
myocyte enhancer factor 2C	Mef2c	-1.52
basic helix-loop-helix family, member e22	Bhlhe22	-1.55
achaete-scute complex homolog 1 (Drosophila)	Ascl1	-1.56
single-minded homolog 1 (Drosophila)	Sim1	-1.58
Meis homeobox 1	Meis1	-1.58
dachshund 1 (Drosophila)	Dach1	-1.72
chromodomain helicase DNA binding protein 8	Chd8	-2.04
myogenic factor 6	Myf6	-2.26
myogenin	Myog	-2.35
paired-like homeobox 2b	Phox2b	-2.39