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. Author manuscript; available in PMC: 2012 Jan 7.
Published in final edited form as: J Mol Biol. 2010 Nov 2;405(1):125–142. doi: 10.1016/j.jmb.2010.10.049

Figure 4. Alignment of DNA sequences upstream of the annotated translation initiation start codons of P23-45 early genes.

Figure 4

The novel promoter elements are highlighted in bold uppercase text. Experimentally identified 5′ RNA ends are highlighted in bold text and underlined. The annotated translation initiation start codons are highlighted in bold lowercase text. The grey boxes indicate stem-forming regions of putative rho-independent terminators. The sequence logos for the early P23-45 promoters and the independently aligned −35 and −10 regions of T. th. HB8 −10/−35 promoters are depicted below the alignment. The size of the letters indicates the degree of conservation; positions are defined with respect to putative or identified transcription start sites.