Fig. 2.
The performance of PETcofold while varying the parameters δ (maximal intra-molecular base pair reliability) and γ (minimal partial structure probability). The 3D plot shows the mean MCC of 32 interactions using input sequences with a minimal pairwise mRNA interaction site sequence identity to the reference of 60%. Predictions were carried out without the option -noLP. The maximal MCC is marked with ‘+’.
