Table 2.

Chromosomal positions of all QTL

		BTA number3
Trait1	Week2	9	11	23	25	13	26	4	21	20	24	2
IgG1	0	x4	x	x	x
	1			x	x	x	x	x
	2			x	x				x	x
	4									x
	8							x		x	x
	10			x				x		x	x	x
		14	18	25	3	16	19	27	20	23	7	12	15	24
IgG2	0	x
	1		x	x
	2			x	x	x	x
	4			x			x	x	x	x
	8						x		x	x	x	x	x
	10								x	x				x
		4	20	6	7	29	9
T-cell FMDV	0	x	x	x
	4				x
	8			xx		x
	10			x		x	x
		29	6	5	24	19	25	7	18
T-cell ConA	0	x	x	xx
	4				x
	8					x
	10			x		x	x	x	x

1. Trait = immune response type to the FMDV15 peptide

2. Week post immunisation

3. Bos Taurus Autosome (BTA) number

4. Each 'X' represents the presence of a QTL, 'XX' represents 2 QTL. All are at least 5% chromosome wide significant

(AUC results are omitted as they are representative of the overall response across time.)