TABLE 2.
Details of the DNA primers used in this investigation
Gene amplified or primer set (purpose or description) | Forward primer | Reverse primer | Amplimer size (bp) |
---|---|---|---|
16S rRNA | 5′-GAGAAGAACGAGTGTGAGAG-3′ | 5′-CTAACACCTAGCACTCATCG-3′ | 391 |
patA (sequencing) | 5′-TCTTGCTCAGTCCATCATCGAATAT-3′ | 5′-CCGCTGTGGATTAGTTCATTTCC-3′ | 2,963 |
patB (sequencing) | 5′-AGAATCCAGTCCAGCGAAAGCT-3′ | 5′-GAAAGAACGACCAGATGTTCCAAT-3′ | 2,959 |
patA (expression) | 5′-ATGTTGTCCTCGCAGCCTAT-3′ | 5′-ACGAACCGATGAACAAGAGG-3′ | 212 |
patB (expression) | 5′-TTGCTGGTTCGGCTGTACTT-3′ | 5′-AACTGCTGTCATCTGGCCTT-3′ | 330 |
hexA (expression) | 5′-GAGAATGCTCGCTCAGGTAA-3′ | 5′-TCACATGAGGAGCTTCAGGA-3′ | 421 |
1 (patA forward primer + transposon primer) | 5′-TCTTGCTCAGTCCATCATCGAATAT-3′ | 5′-CCGGGGACTTATCAGCCAACC-3′ | 1,445 |
2 (patA reverse primer + transposon primer) | 5′-CCGCTGTGGATTAGTTCATTTCC-3′ | 5′-CCGGGGACTTATCAGCCAACC-3′ | 1,566 |
3 (patB forward primer + transposon primer) | 5′-AGAATCCAGTCCAGCGAAAGCT-3′ | 5′-CCGGGGACTTATCAGCCAACC-3′ | 1,487 |
4 (patB reverse primer + transposon primer) | 5′-GAAAGAACGACCAGATGTTCCAAT-3′ | 5′-CCGGGGACTTATCAGCCAACC-3′ | 1,520 |