TABLE 3.
Kinetic parameters for nucleotide incorporation opposite template base dT at 37°C
DNA polymerase | dNTP | kp (s−1) | Kd (μM) | kp/Kd (μM−1 s−1) | Selection factora |
---|---|---|---|---|---|
Pol β | dATP | 32 ± 1 | 9.2 ± 1.0 | 3.5 | |
PMPA-DP | 4.7 ± 0.5 | 50 ± 10 | 9.4 × 10−2 | 40 | |
Pol λ | dATPb | 1.5 ± 0.1 | 0.9 ± 0.3 | 1.7 | |
PMPA-DP | 0.095 ± 0.008 | 3.7 ± 0.9 | 2.6 × 10−2 | 65 | |
Pol η | dATP | 35 ± 3 | 130 ± 26 | 2.7 × 10−1 | |
PMPA-DP | 0.0134 ± 0.0007 | 90 ± 10 | 1.5 × 10−4 | 1,800 | |
Pol κ | dATP | 2.49 ± 0.08 | 7.0 ± 1.0 | 3.6 × 10−1 | |
PMPA-DP | 0.010 ± 0.005 | 3,000 ± 2,000 | 3.3 × 10−6 | 110,000 | |
Pol ι | dATP | 0.015 ± 0.001 | 260 ± 40 | 5.8 × 10−5 | |
PMPA-DP | Could not measure | High | |||
Rev1 | dATP | 0.00152 ± 0.00005 | 2.0 ± 0.3 | 7.6 × 10−4 | |
PMPA-DP | Could not measure | High | |||
Pol γ | dATPc | 45 ± 1 | 0.8 ± 0.1 | 56 | |
PMPA-DPd | 0.21 ± 0.01 | 40.3 ± 5.7 | 5.2 × 10−3 | 10,800 | |
T7 exo | dATPe | 156 ± 8 | 8 ± 2 | 19.5 | |
PMPA-DPe | 0.096 ± 0.009 | 268 ± 39 | 3.6 × 10−4 | 54,400 | |
HIV-1 RT | dATPe | 41.3 ± 0.6 | 8.1 ± 0.9 | 5.1 | |
PMPA-DPe | 49 ± 5 | 58 ± 11 | 8.4 × 10−1 | 6 |