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. 2010 Oct 25;55(1):355–360. doi: 10.1128/AAC.01030-10

TABLE 1.

Oligonucleotide primers used in PCR and DNA sequencing

Resistance gene Primer Sequence (5′ → 3′) Accession no. Hybridization temp (°C) PCR product size (bp) Reference or source
ethA (1,470 bp) ETHA1 ATC ATC GTC GTC TGA CTA TGG BX842584 64 1,278 21
ETHA9 CCT CGA GTA CGT CAA GAG CAC
ETHA10 CGT TGA CGG CCT CGA CAT TAC 64 342 21
ETHA8 GGT GGA ACC GGA TAT GCC TG
ethR (651 bp) ETHR1 CGC TGA CAC CGG AGA TTC C BX842584 59 915 This study
ETHR4 CGC TCC TAT ATG ACC GCA CG
ndh (1,392 bp) Ndh1s ACT GAG TAC CTG GCA GGC TG BX842578 57 1,479 This study
Ndh4as GCT AAC TGA ACT CGC TCA TCG
mshA (1,443 bp) mshA5s GCG TGT CAC TTC GGT TCC TGC BX842573 57 749 This study
mshA6as CAC CGG GAT GGA CCA CGT CG
mshA11s GGC CGC CGT GAA GAA CGC GG 62 1,020 This study
mshA12as CAG CTC GAC GAT CAG CGC GG
dfrA (480 bp) dfr2s CGC TTG CGG GGG ACG AAG C BX842580 61 480 This study
dfr4as GCA TCC GGC GAT CAA AGC TCC
katG (2,223 bp) katA CCC GAT AAC ACC TCC TG BX842578 59 817 5
katCas GTT TCG ACG TCG TTC ATG GC
kat2 CTC GGC GAT GAG CGT TAC AG 59 1,318 5
kat4as CCA GCG GTA AGC GCT TGT AG
katC CCG AGT ACA TGC TGC TCG AC 59 609 5
katEas GGT GAT CGC ACA TCC AGC AC
fabG1-inhA promoter Pro1 TCA ATA CAC CCG CAG CCA BX842576 53 493 5
Pro2 GTC ATC CGC ATG AGG AAT
inhA (810 bp) INHA1 AGG ACG CAC ATG ACA AGC BX842576 53 412 5
INHA2 TCA TGA TCG GCA GCA GCG
INHA3 CCA CAT CTC GGC GTA TTC 53 601 5
INHAD CGA AAT GCA GGT AGT GCT C