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. 2010 Oct 29;77(1):73–79. doi: 10.1128/AEM.01445-10

TABLE 1.

Virtual PCR-RFLP analysis performed with iPCR and REBsites electronic toolsa

vt gene variant GenBank accession no. Predicted size of PCR productsb Predicted sizes of restriction fragmentsc
HincII RsaI
vt1 M19473 898 707, 158, 33 574, 162, 93, 69
vt1c AJ312232 899 708, 158, 33 354, 221, 162, 93, 69
vt1d AY170851 897 864, 33 573,162, 93, 69
a

Predicted sizes of PCR products and restriction fragments for vt1 and vt2 variants are indicated in bp.

b

Calculated with iPCR software (http://www.ch.embnet.org/software/iPCR_form.html).

c

Calculated using REBsites, a virtual digestion tool (http://tools.neb.com/REBsites).