Skip to main content
. 2010 Oct 18;79(1):246–257. doi: 10.1128/IAI.00626-10

TABLE 5.

Computationally predicted feature enrichment

Computational model and parameter or value Total no. of ORFs on the array Immunization with live EB
Immunization with UV-EB
No. of hits Fold enrichmenta P value No. of hits Fold enrichmenta P value
TMHMM
    0 694 129 0.91b 0.020 53 0.98 0.77
    ≥1 214 56 1.28b 0.020 18 1.08 0.77
    ≥5 69 11 0.78 0.44 3 0.56 0.35
    ≥10 26 5 0.94 1.0 1 0.49 0.71
SignalP
    ≥0.7c 134 41 1.50b 2.4 × 10−3 22 2.10b 3.2 × 10−4
    <0.7 774 144 0.91b 2.4 × 10−3 49 0.81b 3.2 × 10−4
PSORTb
    Cytoplasmic 404 86 1.04 0.56 36 1.14 0.32
    Cytoplasmic membrane 195 38 0.96 0.76 11 0.72 0.23
    Extracellular 8 2 1.23 0.67 0 0.00 1.0
    Outer membrane 17 6 1.73 0.13 4 3.01b 0.037
    Periplasmic 10 3 1.47 0.43 2 2.56 0.18
    Unknown 274 50 0.90 0.32 18 0.84 0.42
Total 909 185 71
a

Relative to the percentage represented in the genome.

b

P value of <0.05.

c

Contains signal peptide.