TABLE 3.

Number of regulated genes in each of three comparisons, filtered by different adjusted P value thresholds^a

P value threshold	TTI vs C		TT vs C		TTI vs TT
	No. of genes	%	No. of genes	%	No. of genes	%
Adjusted
<0.05	9,003	52	4,141	24	4,677	27
<0.01	6,766	38	2,041	12	1,644	9
<0.001	4,423	25	841	5	189	1
Filteredb
Upregulated genes	2,022		410		128
Downregulated genes	2,401		431		61

^aThe comparisons included groups TTI versus C, TT versus C, and TTI versus TT. The percent values are of the total number of genes selected for normalization and analysis (n = 17,214).

^bThat is, filtered at the adjusted P value of <0.001.