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. 2010 Nov 17;49(1):335–344. doi: 10.1128/JCM.01142-10

TABLE 7.

Genome sequences for gut flora and pathogens used in ThermoBLAST analysis to check primer and probe sequence designs for hybridization that could cause false-positive tests

GenBank accession no. Organism
NC_003228 Bacteroides fragilis NCTC 9343
NC_004663 Bacteroides thetaiotaomicron VPI-5482
NC_009614 Bacteroides vulgatus
NC_008618 Bifidobacterium adolescentis ATCC 15703
NC_011835 Bifidobacterium animalis subsp. lactis AD011
NC_012814 Bifidobacterium animalis subsp. lactis Bl-04
NC_012815 Bifidobacterium animalis subsp. lactis DSM 10140
NC_004307 Bifidobacterium longum NCC2705
NC_010816 Bifidobacterium longum DJO10A complete genome
NC_008226 Clostridium difficile 630 plasmid pCD630
NC_013316 Clostridium difficile R20291
NC_009778 Cronobacter sakazakii ATCC BAA-894 chromosome
NC_009436 Enterobacter sp. 638
NC_004668 Enterococcus faecalis V583
NC_012759 Escherichia coli BW2952
NC_006814 Lactobacillus acidophilus NCFM
NC_010999 Lactobacillus casei BL23
NC_010609 Lactobacillus reuteri JCM 1112
NC_010729 Porphyromonas gingivalis ATCC 33277
NC_010554 Proteus mirabilis HI4320
NC_004631 Salmonella enterica subsp. enterica serovar Typhi strain Ty2
NC_002305 Salmonella typhi (antibiotic resistance plasmid)