TABLE 1.
dmdA sequence number, cluster number (90% sequence identity), diversity, and coveragea
| Day | Control |
Experimental |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| No. of reads | No. of clusters | Normalized no. of clusters | H′ | Coverage (%) | No. of reads | No. of clusters | Normalized no. of clusters | H′ | Coverage (%) | |
| 0 | 6,222 | 208 | 168 (152-185) | 3.85 | 66 | 4,842 | 206 | 178 (161-191) | 3.92 | 69 |
| 1 | 6,632 | 238 | 192 (175-206) | 4.01 | 68 | 5,254 | 240 | 203 (183-217) | 4.12 | 69 |
| 2 | 6,385 | 194 | 163 (149-176) | 3.86 | 76 | 6,348 | 201 | 170 (154-184) | 4.01 | 75 |
| 3 | 7,854 | 181 | 143 (125-162) | 3.58 | 70 | 6,765 | 197 | 158 (141-176) | 3.64 | 69 |
| 4 | 9,130 | 216 | 160 (141-175) | 3.69 | 67 | 7,202 | 205 | 161 (143-178) | 3.81 | 66 |
| 5 | 15,882 | 211 | 162 (148-175) | 3.81 | 86 | 6,851 | 245 | 193 (176-211) | 4.17 | 67 |
| 6 | 7,394 | 164 | 135 (118-148) | 3.49 | 76 | 6,167 | 185 | 158 (143-169) | 4.02 | 76 |
a
Normalized no. of clusters, cluster numbers estimated for a 4,800-sequence library to normalize for differences in number of reads across samples; the range of 1,000 bootstraps is given in parentheses. H′, Shannon-Wiener diversity index. Coverage, Good's coverage.