TABLE 1.
Species (no. of isolates) and test method | Typeability (%) | Simpson's index of diversity (95% CI)a | Adjusted Rand's coefficient | Wallace's coefficient 1 | Wallace's coefficient 2 |
---|---|---|---|---|---|
E. cloacae (28) | |||||
DL | 100 | 0.794 (0.632-0.955) | 0.691 | 0.682 | 0.818 |
PFGE | 96.4 | 0.843 (0.703-0.983) | |||
Klebsiella spp. (23) | |||||
DL | 100 | 0.964 (0.868-0991) | 0.623 | 0.808 | 1.0 |
PFGE | 95.7 | 0.938 (0.894-0.982) | |||
E. coli (38) | |||||
DL | 100 | 0.972 (0.952-0.992) | 0.390 | 0.450 | 0.375 |
MLVA | 100 | 0.966 (0.941-0.990) | |||
P. aeruginosa (13) | |||||
DL | 100 | 0.962 (0.919-1.0) | 0.488 | 1.0 | 0.333 |
PFGE | 92.3 | 0.985 (0.949-1.0) | |||
P. aeruginosa (52) | |||||
DL | 100 | 0.977 (0.958-997) | 0.212 | 0.182 | 0.333 |
MLST | 100 | 0.928 (0.828-0.989) | |||
Acinetobacter spp. (26) | |||||
DL | 100 | 0.982 (0.966-0.997) | 0.908 | 0.833 | 1.0 |
PFGE | 100 | 0.985 (0.970-0.999) | |||
Stenotrophomonas spp. (25) | |||||
DL | 100 | 0.963 (0.913-1.0) | 0.697 | 0.6 | 0.857 |
PFGE | 96 | 0.975 (0.937-1.0) | |||
E. faecium (26) | |||||
DL | 100 | 0.929 (0.868-0.991) | 0.623 | 0.826 | 0.543 |
MLVA/esp | 100 | 0.892 (0.822-0.962) | |||
MRSA (50) | |||||
DL | 100 | 0.913 (0.859-0.968) | 0.266 | 0.189 | 0.571 |
Hospital hygiene classification | 100 | 0.976 (0.960-0.991) | |||
MRSA (50) | |||||
DL | 100 | 0.913 (0.859-0.968) | 0.261 | 0.198 | 0.568 |
PFGE | 100 | 0.970 (0.953-0986) | |||
MRSA (50) | |||||
DL | 100 | 0.913 (0.859-0.968) | 0.303 | 0.377 | 0.354 |
spa typing | 100 | 0.908 (0.858-0.957) | |||
MRSA (50) | |||||
DL | 100 | 0.913 (0.859-0.968) | 0.252 | 0.189 | 0.571 |
MLVA | 100 | 0.971 (0.955-0.988) |
CI, confidence interval.