Table 1.
Bacterial strains
| Strain | Genotype | Reference |
| DE407 | lexA3(Ind−) malB::Tn9 | (23) |
| JW3906 | BW25113 ΔpriA::KanR | National BioResource Project (National Institute of Genetics, Japan) |
| JW5604 | BW25113 Δrep::KanR | National BioResource Project (National Institute of Genetics, Japan) |
| MDS42 | MG1655 deleted for ~14% of genome | (40) |
| N4849 | MG1655 rpoB*35 | (7) |
| N5530 | MG1655 rpoB*35 argE86::Tn10 | (7) |
| N8095 | N99 ΔrecA::TetR | Laboratory collection |
| N8096 | N99 ΔrecB::TetR | Laboratory collection |
| RSW421 | MDS42 nusA::CamR | (15) |
| RSW422 | MDS42 nusG::KanR | (15) |
| RSW427 | RSW422 ΔnusA::CamR | Present study |
| RSW454 | MDS42 Δrep::CamR | Present study |
| RSW455 | MDS42 ΔrecA::TetR | Present study |
| RSW472 | MG1655 Δrac::CamR | (15) |
| RSW481 | RSW472 nusG::KanR | (15) |
| RSW554 | MDS42 ΔruvC::CamR | Present study |
| RSW585 | MDS42 ΔpriA::KanR | Present study |
| RSW464 | MDS42 ΔrecB::TetR | Present study |
| RSW680 | MDS42 codA21::miniTn7kan(I-Sce I) | Present study |
| RSW712 | MDS42 rpoB*35 argE86::Tn10 | Present study |
| RSW738 | MDS42 mfd::KanR | Present study |
| RSW828 | RSW712 Δrep::CamR | Present study |
| RSW876 | N4849 Δrac::CamR | Present study |
| RSW915 | RSW876 Δrep::KanR | Present study |
| RSW919 | MDS42 lexA3 malB::CamR | Present study |
| RSW921 | MG1655 Δrep::KanR | Present study |
| STL7371 | MG1655 Δrep::CamR | S. Lovett |
| STL7505 | MG1655 ΔruvC::CamR | S. Lovett |
| SMR8476 | MG1655 codA21::miniTn7kan(I-Sce I) | (41) |
| UNCNOMFD | mfd::KanR | (23) |