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. 2010 Oct 26;28(2):1043–1056. doi: 10.1093/molbev/msq280

Table 2.

Haplotype Configuration Tests.

K (95%) M (95%) Hd (Haplotype configuration) P
Drosophila melanogaster
    CG7275 12 (7, 12) 1 (1, 5) 0.917 (12, 0, 0, 0, ,0, 0, 0, 0, 0, , 0) ns
    yellow-k 11 (7, 12) 2 (1, 5) 0.903 (10, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
    CrebA 11 (6, 12) 2 (1, 5) 0.903 (10, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
    AGO2 7 (7, 12) 3 (1, 4) 0.820 (4, 1, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0) 0.025
    CG7739 9 (5, 10) 2 (2, 6) 0.875 (6, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
    CG6498 7 (6, 11) 5 (2, 5) 0.764 (5, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0) ns
    CG12301 9 (6, 11) 2 (2, 5) 0.875 (6, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
    RhoGAP71E 8 (4, 9) 3 (2, 7) 0.847 (5, 2, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
    CG7372 9 (6, 12) 3 (1, 5) 0.861 (7, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0) ns
D. simulans
    CG7275 14 (14, 21) 4 (1, 4) 0.903 (10, 2, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns
    yellow-k 16 (14, 20) 3 (2, 4) 0.921 (13, 1 , 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns
    CrebA 20 (13, 20) 2 (2, 5) 0.948 (19, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns
    AGO2 8* (10, 18) 13** (2, 8) 0.594** (6, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0,…) <0.005
    CG7739 6** (9, 17) 14** (1, 8) 0.530** (3, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1,…) <0.005
    CG6498 18 (12, 20) 3 (2, 5) 0.934 (16, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns
    CG12301 14 (14, 21) 6** (1, 4) 0.875* (11, 2, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0,…) 0.011
    RhoGAP71E 17 (12, 19) 4 (2, 6) 0.921 (15, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns
    CG7372 18 (16, 21) 2 (1, 4) 0.939 (15, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,…) ns

Note.—K (95%) is the number of haplotypes (95% bounds under neutrality from simulation), M (95%) the frequency of the most common haplotype (95% bounds under neutrality from simulation), and Hd the haplotype diversity (as in Depaulis and Veuille 1998). Asterisks denote significance. The haplotype configuration is a vector that records the frequency of haplotypes occurring n times in the sample where n = (1,2,3, …, x) and x is the sample size (Innan et al. 2005). Note that the fragment from Yellow-k partly overlaps locus CG7945).