Table 8.
Average nucleotide polymorphism (θw), nucleotide diversity (θπ), and Tajima's D per chromosome
T. aestivum | Wild emmer | Synthetic wheats | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A genome (× 10-3) |
B genome (× 10-3) |
D genome (× 10-3) |
A genome (× 10-3) |
B genome (× 10-3) |
D genome (× 10-3) |
|||||||||||||
Chromosome | θw | θπ | D | θw | θπ | D | θw | θπ | D | θw | θπ | D | θw | θπ | D | θw | θπ | D |
1 | 0.67 | 0.64 | -0.14 | 0.66 | 0.71 | 0.07 | 0.31 | 0.32 | -0.10* | 0.69 | 0.73 | 0.09 | 0.82 | 0.90 | 0.37 | 1.18 | 1.28 | 0.42 |
2 | 0.56 | 0.57 | 0.08 | 0.74* | 0.87* | 0.30 | 0.40 | 0.29 | -0.65 | 0.83* | 0.96* | 0.50* | 0.79 | 0.81 | 0.06 | 1.07* | 1.23 | 0.57 |
3 | 0.49 | 0.46 | -0.21 | 0.66 | 0.72 | 0.30 | 0.11* | 0.08* | -0.79 | 0.60 | 0.65 | 0.21 | 0.81 | 0.76 | -0.10 | 1.16 | 1.37 | 0.73 |
4 | 0.45* | 0.42* | -0.11 | 0.24* | 0.16* | -0.78* | 0.15 | 0.10 | -0.77 | 0.59 | 0.50* | -0.39* | 0.75 | 0.61 | -0.56* | 1.19 | 1.41 | 0.61 |
5 | 0.77* | 0.76* | 0.15 | 0.45 | 0.48 | 0.21 | 0.09* | 0.06* | -0.84 | 0.54* | 0.51* | -0.18 | 0.56* | 0.47* | -0.58* | 1.65* | 1.82* | 0.39 |
6 | 0.60 | 0.66 | 0.26 | 0.65 | 0.66 | 0.06 | 0.21 | 0.21 | -0.27 | 0.77 | 0.80* | 0.05 | 0.79 | 0.76 | -0.07 | 1.67* | 1.90* | 0.44 |
7 | 0.63 | 0.51 | -0.57 | 0.66 | 0.59 | -0.28* | 0.24 | 0.16 | -0.86 | 0.69* | 0.77* | 0.38* | 0.77 | 0.74 | -0.05 | 1.34 | 1.63 | 0.78* |
Coef. variat. | 0.18 | 0.21 | 0.30 | 0.38 | 0.52 | 0.59 | 0.15 | 0.23 | 0.12 | 0.19 | 0.18 | 0.18 |
* Means outside of the 99% bootstrap confidence interval of the genome mean