Table 1.
SET | Contigs | Singletons | TOTAL SEQs | GC% | LENGTHs [min/median/max/avg] |
|||
---|---|---|---|---|---|---|---|---|
90 | 52,885 | 137,213 | 190, 098 | 35.130 | 20 | 354 | 6812 | 355.78 |
95 | 52,501 | 137,077 | 189,578 | --- | --- | --- | --- | --- |
98 | 52,321 | 137,353 | 189,674 | 35.127 | 20 | 354 | 6812 | 355.82 |
90e | 53,867 | 138,766 | 192,633 | 35.108 | 20 | 358 | 7918 | 364.81 |
Set names are related to the corresponding homology level cutoff value (90e stands for 90% similarity including the set of NCBI Unigene ESTs). Contigs are the result of at least two sequencing reads, and singletons of only one read. GC content is the average value for all sequences. Sequence lengths are shown as minimum, median, maximum and average values in nucleotides for each set.