Table 1. Oligonucleotides used in the different real-time LCR trials.
Oligonucleotide | Sequence 5′→3′ | Tm a |
LCPR1 b | CACTTCCCAGCATGTAGCCAC | 68.6°C |
LCPR2 | GTGGCTACATGCTCGGAAGTGT | 69.6°C |
LCPR3S | AAGAGGCCTGCTCATGA | 66.7°C |
LCPR4S b | CATGAGCAGGCCTCTT | 65.0°C |
LCPR2G | GTGGCTACATGCTCGGAAGTG | 68.9°C |
LCPR3G | AAGAGGCCTGCTCATG | 65.0°C |
LCPR3L | CAAAATGTATAAGAGGCCTGCTCATGA | 69.8°C |
LCPR4L b | CATGAGCAGGCCTCTTATACATTTTG | 68.9°C |
The nucleotides which complement to the mutant SNP target are underlined on the discriminating oligonucleotides.
The melting temperature Tm was estimated using the DINAMelt web server (http://www.bioinfo.rpi.edu/applications/hybrid/hybrid2.php).
5′ phosphorylation on the ligating oligonucleotide.