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. 2011 Jan 19;6(1):e14560. doi: 10.1371/journal.pone.0014560

Table 1. Oligonucleotides used in the different real-time LCR trials.

Oligonucleotide Sequence 5′→3′ Tm a
LCPR1 b CACTTCCCAGCATGTAGCCAC 68.6°C
LCPR2 GTGGCTACATGCTCGGAAGTGT 69.6°C
LCPR3S AAGAGGCCTGCTCATGA 66.7°C
LCPR4S b CATGAGCAGGCCTCTT 65.0°C
LCPR2G GTGGCTACATGCTCGGAAGTG 68.9°C
LCPR3G AAGAGGCCTGCTCATG 65.0°C
LCPR3L CAAAATGTATAAGAGGCCTGCTCATGA 69.8°C
LCPR4L b CATGAGCAGGCCTCTTATACATTTTG 68.9°C

The nucleotides which complement to the mutant SNP target are underlined on the discriminating oligonucleotides.

a

The melting temperature Tm was estimated using the DINAMelt web server (http://www.bioinfo.rpi.edu/applications/hybrid/hybrid2.php).

b

5′ phosphorylation on the ligating oligonucleotide.