Table 3.
Novel polymorphic loci predicted by RISCI for full length L1HS by comparison of reference human genome with the alternate human genomes
| LOCUS | Ortholog empty in | R-score | hg18 coordinates | Match in dbRIP |
|---|---|---|---|---|
| L1HS_1_4c | HuRef | 80 | chr1:81177500-81183677 | NA |
| L1HS_1_5c | Celera, HuRef | 100 | chr1:84290051-84296742 | NA |
| L1HS_4_3c | Celera, HuRef | 100 | chr4:18688621-18694707 | NA |
| L1HS_4_13c | Celera, HuRef | 56.5 | chr4:75861787-75867832 | NA |
| L1HS_5_24 | HuRef | 100 | chr5:177131852-177137889 | NA |
| L1HS_7_10c | Celera, HuRef | 100 | chr7:96313896-96319990 | NA |
| L1HS_9_2c | Celera, HuRef | 100 | chr9:46329639-46335695 | NA |
| L1HS_11_4c | Celera, HuRef | 57 | chr11:48825824-48831881 | NA |
| L1HS_11_12 | Celera, HuRef | 99 | chr11:92793798-92799846 | NA |
| L1HS_14_1c | Celera, HuRef | 88 | chr14:18130292-18136344 | NA |
| L1HS_X_9c | HuRef | 100 | chrX:65317263-65323363 | NA |
| L1HS_Y_1 | Celera | 100 | chrY:3371591-3378526 | NA |
| L1HS_Y_2c | Celera | 100 | chrY:4876952-4882987 | NA |
| L1HS_Y_3c | Celera | 100 | chrY:5534205-5540267 | NA |
Details for these loci may be referred to in Additional file 1.