Table 1.

Markers significant at p<0.0001 in comparison between schizophrenia and bipolar disorder cohorts.

Marker	Ch r	Position		Genotype counts			Minus log(p)		Nearest gene	Distance to nearest gene
			Schizophreni a (SZ)	Bipolar disorder (BP)	Controls (C)	SZ v. BP	SZ v. C	BP v. C
rs11210359	1	74339167	76 276 171	55 205 241	70 237 197	5.1	1.0	2.2	LRRIQ3	152kb
rs17075286	3	43230733	10 33 462	0 13 483	0 14 491	6.1	5.9	0.05	C3orf39	98kb
rs1795648	3	55571760	63 217 242	27 185 290	49 195 263	5.2	1.3	2.0	ERC2	0kb
rs1203847	4	2517447	4 29 481	0 7 484	0 3 486	5.0	6.9	0.4	RNF4	0kb
rs6459804	7	15751019 5	74 254 195	112 264 130	89 248 168	5.1	1.1	2.2	PTPRN2	0kb
rs6459806	7	15751048 3	75 253 195	113 263 130	89 248 168	5.1	1.0	2.2	PTPRN2	0kb
rs17645023	17	64917033	14 158 331	31 208 24	25 180 288	6.2	2.1	1.7	CACNG5	36kb
rs7065696	X	53974054	43 32 447	0 34 451	1 39 449	6.4	4.6	0.4	PHF8	0kb