Table 2.
The performance of prior knowledge based identification methods on PPI networks (MYP) with the aid of protein functional pairs (T2)
| Parameter | Algo. | MYPT2 | Algo. | MYP | ||||
|---|---|---|---|---|---|---|---|---|
| #modules | –log(p – value) | Coverage | #modules | –log(p – value) | Coverage | |||
| r = 5 | ssMCL | 352 | 7.77136 | 0.97342 | MCL | 483 | 4.68541 | 0.97214 |
| t = 0.05 | ssMCODE | 99 | 11.04522 | 0.30314 | MCODE | 137 | 7.66 | 0.27335 |
| s = 6500 | ssNG | 286 | 6.95497 | 0.85456 | NG | 522 | 4.23116 | 0.83421 |
| k = 350 | ssHCcc | 201 | 6.07873 | 0.92314 | HCcc | 173 | 4.1128 | 0.87769 |
| k = 350 | ssHCnb | 220 | 5.96928 | 0.93412 | HCnb | 173 | 4.0578 | 0.86120 |