Table 3.
Computational speed.
Steps | 3DZD | CE | |
---|---|---|---|
Preprocessing | Surface generation | 1.42 (seconds) | - |
Voxelization | 3.70 | - | |
Computing descriptor | 7.83 | - | |
Pair-wise comparison | 1.46 x 10-4 | 2.66 | |
PDB database scan a) | 9.36 | 1 day 23 hours 36 minutes |
The values are averaged over the 2337 proteins. a) Times for the search against 64098 proteins.