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. 2010 Jun 16;26(16):2004–2011. doi: 10.1093/bioinformatics/btq309

Table 4.

BiNGO results of the small detached component around TP53 (Fig. 2) in the literature-curated protein database (Maere et al., 2005)

GO-ID −Log P GO term
7049 15.8761 Cell cycle
6974 12.6819 Response to DNA damage stimulus
279 12.2596 M phase
6281 12.1261 DNA repair
22 403 11.5544 Cell-cycle phase
22 402 11.5421 Cell-cycle process
6259 11.4597 DNA metabolic process
43 283 9.3883 Biopolymer metabolic process
43 687 8.9393 Post-translational protein modification
6796 8.2857 Phosphate metabolic process
6793 8.2857 Phosphorus metabolic process
7126 8.0123 Meiosis
51 327 8.0123 M phase of meiotic cell cycle
51 321 7.9706 Meiotic cell cycle
6464 7.6440 Protein modification process
6302 7.6216 Double-strand break repair
6310 7.5607 DNA recombination
43 170 7.5607 Macromolecule metabolic process
43 412 7.5186 Biopolymer modification
6468 7.5171 Protein amino acid phosphorylation
74 7.4559 Regulation of cell cycle
42 770 7.3665 DNA damage response, signal transduction

Note here that the P-values reported in the column labeled −Log P are the BiNGO P-values for clustering, not the P-values delivered by the Poisson model.