. 2010 Sep 1;19(2):186–193. doi: 10.1038/ejhg.2010.144

Table 1. Allele frequencies from individual DNA genotyping and results of χ²-statistics of selected SNPs initially identified in GWAS using pooled DNA from 160 patients and 80 control individuals.

SNP	Cluster	Chr.	Allele	Cases	Controls	χ²	P-value	P_c value*
rs4316338	1	1	C	0.741	0.656	3.679	0.0551
rs3102053	2	1	T	0.778	0.620	13.249	0.0003	0.0057
rs7532572	2	1	A	0.703	0.603	4.620	0.0316
rs4839282	3	1	A	0.582	0.406	13.143	0.0003	0.0057
rs6682717	3	1	C	0.582	0.405	13.211	0.0003	0.0057
rs6728372	4	2	T	0.519	0.406	5.408	0.0200
rs17268959	4	2	G	0.523	0.395	6.683	0.0097
rs13012537	5	2	T	0.584	0.431	10.049	0.0015	0.0285
rs13411233	6	2	A	0.238	0.133	7.153	0.0075
rs1346776	6	2	C	0.253	0.127	10.164	0.0014	0.0266
rs2758813	7	6	T	0.312	0.219	4.638	0.0313
rs1744380	7	6	G	0.306	0.225	3.499	0.0614
rs2141388	8	7	T	0.303	0.156	12.138	0.0005	0.0095
rs2107856	8	7	T	0.303	0.156	12.138	0.0005	0.0095
rs1391466	9	8	A	0.336	0.222	6.664	0.0098
rs903146	9	8	C	0.381	0.272	5.570	0.0183
rs10964882	10	9	T	0.866	0.759	8.465	0.0036
rs7047811	10	9	T	0.868	0.753	9.844	0.0017	0.0323
rs1433612	11	5	T	0.734	0.627	5.839	0.0157

^*P_c value: P-value after Bonferroni correction. Nominally significant P-values are in bold.

Table 1. Allele frequencies from individual DNA genotyping and results of χ2-statistics of selected SNPs initially identified in GWAS using pooled DNA from 160 patients and 80 control individuals.