Table 1. Oligonucleotides used in this study.
| SNP for Q-PCR analysis | Sequence 5′–3′ | Reference sequence. NM_000368.3 5′–3′ |
|---|---|---|
| rs36021960 | ttcctgtcttgctcggttactca | 134.838.750 |
| ttttcggtgagactggg | 134.838.712 | |
| catgacgttcctgcccttaag | 134.838.670 | |
| rs2905078 | ggctggaagtcggaaatcaa | 134.831.005 |
| tgtcggcaggattg | 134.830.983 | |
| cctcggagactccagaaggaa | 134.830.948 | |
| rs3011289 | cctgccaaagtacagcagtttg | 134.821.751 |
| ctccaagtgcaccctt | 134.821.773 | |
| tccagcaacaggtggtacattt | 134.821.812 | |
| rs7040593 | acccttgacagtggaggacatt | 134.816.600 |
| cgagaactcttcatcgac | 134.816.626 | |
| ttgcagttccaagagaggtttga | 134.816.670 | |
| rs869116 | ctccctccgcaccagatg | 134.814.011 |
| agcctgtgctggtca | 134.814.037 | |
| cccagacagagaagggcaaa | 134.814.078 | |
| rs12380834 | agttccaccaatctgcaaactacttt | 134.811.775 |
| aggaacagactcttccct | 134.811.803 | |
| gaatcccttccctggtgtgaa | 134.811.846 | |
| rs11796704 | ccagccttcttgtttccataaaat | 134.807.844 |
| agtgcttcaggtcctg | 134.807.817 | |
| ccagtgaggaagaggacaactga | 134.807.775 | |
| rs700797 | tggactcagttgccctctgaa | 134.805.668 |
| ctgtgggaagctatgg | 134.805.644 | |
| tgggacataaagggtagaagagaaa | 134.805.598 | |
| rs13300390 | gctctctcacagctcataatgcat | 134.803.943 |
| ctagggcagagatatgtgaa | 134.803.914 | |
| caggacccgtacgccattt | 134.803.874 | |
| rs5203101 | ttaggaggagccaaaggtagactct | 134.801.009 |
| taggctcaggaatggg | 134.800.982 | |
| ccttggctaagccacatgct | 134.800.946 | |
| rs12337302 | ctggttctcgtctgtgcctagtac | 134.784.975 |
| cagctgtcatcctagtct | 134.784.950 | |
| cacaggagagaggcgaagga | 134.784.903 | |
| rs2809244 | tcactggctccttcctaccaa | 134.760.050 |
| ccctgcctcagctg | 134.760.075 | |
| gcctaagaactgtggtctggtgtt | 134.760.113 | |
| rs2073869 | tcctgcagataccctcatgatg | 134.753.491 |
| tcagctgtgacgaggc | 134.753.524 | |
| acgccgccgtagtggtt | 134.753.560 | |
| rs2231405 | tgcttggcatcccacagtt | 134.749.724 |
| ctcaacccccagtgga | 134.749.704 | |
| ggatcctgtccttcccatca | 134.749.666 | |
| rs2519759 | agagggaaaatggcacagtca | 134.744.564 |
| tgcagacagcccc | 134.744.586 | |
| aagcggagccagaacttgaa | 134.744.621 | |
| rs2072058 | tgaaacccaacaggcgacat | 134.739.974 |
| agggcaggcgaaag | 134.739.999 | |
| cagaatgacccatggaatcaatta | 134.740.042 | |
| rs12555164 | cacccaaacacaaagagtgtaacg | 134.693.461 |
| tgggacagagcacg | 134.693.486 | |
| caggcagaactttccgtcatg | 134.693.523 | |
| rs35602700 | tggcaactaaggctgcatga | 134.673.378 |
| ttaagctcgaccctgttt | 134.673.399 | |
| caggagtttgctctgcatacga | 134.673.439 | |
| rs4962216 | tgaattcatttcttctcacattttcc | 134.654.970 |
| cccccatctttgagc | 134.655.000 | |
| ttctaagcatgacacagcattggt | 134.655.039 | |
| Deletion-specific PCR | ||
| c.[–24893_–15354 del9540; –24902_ –24847inv56] | agctccttgggaaacaggat | 134.810.337 |
| gggctctgcaaatagctgtc | 134.809.122 | |
| aaacagggggcaggaaatag | 134.819.205 | |
| c.[–21656_–14846 del6811; –18011_–17856inv156] | ccccatacaaacagagaaagc | 134.816.026 |
| actgccatcccaaacaaaag | 134.808.562 | |
| ttcgagaaggaggggaggt | 134.809.913 | |
| c.[–18348_–18313 del36;–18267_–11107del7161ins7] | tggactcagttgccctctgaa | 134.805.668 |
| gggcagtggttctcaaaatg | 134.805.005 | |
| ctggggctggtactgtgatt | 134.812.518 | |
| c.–16116_–15364del753 | gggatccctaccaagcaagt | 134.809.625 |
| gggctctgcaaatagctgtc | 134.809.122 | |
| agctccttgggaaacaggat | 134.810.337 | |
| c.–12499_*67438 del112575 | ||
| tgggacataaagggtagaagagaaa | 134.805.598 | |
| cacccaaacacaaagagtgtaacg | 134.693.461 | |
| ggtgaattttgggctctgaa | 134.807.378 | |
| c.738–1380_*101485 del119088 | tttgtgtctcttcccccacttct | 134.779.656 |
| tggaaggctctatggcagat | 134.660.735 | |
| ccatttttccctgcctagaa | 134.659.847 | |
| c.738–1292_*4009 del21524 | accctcctgtccaaacactg | 134.757.047 |
| taaaaatattcttggccgggtaca | 134.779.420 | |
| gcagggaaaaatgtcctttg | 134.777.973 | |
| c.–38403_*17484 del88525 | cacttcacccatactggagc | 134.832.923 |
| ctggttctgtcagtgctccc | 134.743.808 | |
| aagcggagccagaacttgaa | 134.744.621 | |
Abbreviations: Q-PCR, quantitative PCR; SNP, single nucleotide polymorphism.
Overview of oligonucleotides used for Q-PCR analysis and deletion-specific breakpoint PCR.