Table 2. Genetic diversity indices estimated for Filipino groups.

Filipino groups	nPop	nHg	HgD	SE	nHt	HtD	SE	MPD	SE
Negrito	180	10	0.80	0.01	70	0.98	0.00	4.34	2.16
Aeta Z	19	1	0.00	0.00	10	0.91	0.04	2.78	1.54
Aeta B	15	3	0.28	0.14	8	0.79	0.10	3.75	2.00
Agta	39	8	0.83	0.03	19	0.95	0.02	4.63	2.32
Iraya	16	3	0.57	0.11	5	0.65	0.11	2.34	1.35
Ati	36	7	0.78	0.04	12	0.83	0.05	3.61	1.87
Mamanwa	55	6	0.65	0.04	23	0.94	0.01	3.58	1.85
Non-Negrito	210	10	0.75	0.02	93	0.98	0.00	3.69	1.88
Ivatan	35	4	0.56	0.08	24	0.97	0.01	3.34	1.75
CAR	9	3	0.72	0.10	8	0.97	0.06	3.75	2.09
Bugkalot	17	2	0.12	0.10	8	0.82	0.08	2.08	1.22
Kalangoya	12	3	0.67	0.09	7	0.89	0.06	2.83	1.60
Tadyawan	14	1	0.00	0.00	5	0.59	0.14	1.40	0.91
Tawbuid	13	2	0.28	0.14	8	0.88	0.07	2.37	1.38
Hanunuo	15	4	0.55	0.14	9	0.90	0.05	2.80	1.57
Surigaonon	32	5	0.73	0.05	24	0.97	0.02	3.80	1.96
Manobo	56	7	0.66	0.06	24	0.93	0.02	3.58	1.85
Maranao	7	3	0.76	0.11	6	0.95	0.10	3.67	2.11
Philippines	390	11	0.81	0.01	143	0.98	0.00	4.06	2.03

Abbreviations: HgD, haplogroup diversity; HtD, haplotype diversity; MPD, mean pairwise haplotype difference; nHg, number of Y-SNP haplogroups; nHt, number of Y-STR haplotypes; nPop, population sample size.