Table 1.
Predicted ORFs for eiAU, eiDWF, and eiMSLS, and the most similar BLAST hits for each of the phage ORFs
| ϕeiAU ORF/Strand | Position | Size | Putative function [Nearest neighbor] | Accession # | Best match E value/% aa identity | Presence in | |||
|---|---|---|---|---|---|---|---|---|---|
| Start | Stop | bp | aa | ϕeiDWF | ϕ MSLS | ||||
| 1/- | 220 | 459 | 240 | 79 | None | [+] | [+] | ||
| 2/+ | 458 | 925 | 468 | 155 | DNA Repair ATPase [Salmonella phage] | YP_003090241.1 | 1E-49/67 | [+] | [+] |
| 3/+ | 922 | 1260 | 339 | 112 | None | [+] | [+] | ||
| 4/+ | 1319 | 2668 | 1350 | 449 | helicase [Enterobacteria phage] | YP_002720041.1 | 0.0/70 | [+] | [+] |
| 5/+ | 3035 | 3211 | 177 | 58 | None | [-] | [-] | ||
| 6/+ | 3239 | 4126 | 888 | 295 | phage methyltransferase [Edwardsiella tarda] | ZP_06713110.1 | 4E-98/69 | [+] | [+] |
| 7/+ | 4126 | 4836 | 711 | 236 | N-6-adenine-methyltransferase [Escherichia coli] | YP_003041971.1 | 3e-18/45 | [-] | [-] |
| 8/+ | 5164 | 5526 | 363 | 120 | None | [+] | [+] | ||
| 9/+ | 5523 | 5804 | 282 | 93 | None | [+] | [+] | ||
| 10/- | 6073 | 5816 | 258 | 85 | None | [+] | [-] | ||
| 11/- | 6581 | 6060 | 522 | 173 | hypothetical protein [Phage PY100] | CAJ28429.1 | 8E-20/38 | [+] | [+] |
| 12/- | 6869 | 6603 | 267 | 88 | None | [+] | [+] | ||
| 13/- | 7721 | 7020 | 702 | 233 | hypothetical protein [Phage PY100] | CAJ28427.1 | 2E-09/36 | [+] | [+] |
| 14/- | 8175 | 7822 | 354 | 117 | phage tail assembly chaperone gp38 [Enterobacter sp.] | YP_001178193.1 | 9e-11/53 | [+] | [-] |
| 15/- | 9179 | 8172 | 1008 | 335 | tail fiber protein [Enterobacteria phage] | NP_037718.1 | 2e-10/38 | [+] | [+] |
| 16/- | 12809 | 9198 | 3612 | 1203 | phage host specificity protein [Yersinia kristensenii] | ZP_04623740.1 | 0.0/42 | [+] | [+] |
| 17/- | 13333 | 12809 | 524 | 174 | phage tail assembly protein [Yersinia enterocolitica phage] | YP_001006526.1 | 8E-50/59 | [+] | [+] |
| 18/- | 14112 | 13393 | 720 | 239 | phage minor tail protein [Enterobacteria phage] | YP_002720062.1 | 4E-56/48 | [+] | [+] |
| 19/- | 14887 | 14117 | 771 | 256 | phage minor tail protein L [Yersinia pseudotuberculosis] | YP_001721823.1 | 5E-66/51 | [+] | [+] |
| 20/- | 15228 | 14884 | 345 | 114 | phage minor tail protein M [Enterobacteria phage phi80] | CBH95068.1 | 1E-12/39 | [+] | [+] |
| 21/- | 17990 | 15288 | 2703 | 900 | phage tail tape measure protein [Enterobacteria phage] | YP_002720065.1 | 8E-126/38 | [+] | [+] |
| 22/- | 19188 | 18862 | 327 | 108 | gp16 [Sodalis phage SO-1] | YP_003344951.1 | 5E-20/48 | [+] | [+] |
| 23/- | 19523 | 19167 | 357 | 118 | gp15 [Sodalis phage SO-1] | YP_003344950.1 | 9E-16/38 | [+] | [+] |
| 24/- | 20305 | 19703 | 603 | 200 | putative major tail protein [Enterobacteria phage] | YP_002720068.1 | 2E-54/58 | [+] | [+] |
| 25/- | 20766 | 20338 | 429 | 142 | gp13 [Sodalis phage SO-1] | YP_003344948.1 | 1E-08/38 | [+] | [+] |
| 26/- | 21395 | 20763 | 633 | 210 | gp12 [Sodalis phage SO-1] | YP_003344947.1 | 6E-53/55 | [+] | [+] |
| 27/- | 21748 | 21392 | 357 | 118 | phage structural protein [Enterobacteria phage] | YP_002720071.1 | 9E-23/48 | [+] | [+] |
| 28/- | 21884 | 21729 | 156 | 51 | None | [+] | [+] | ||
| 29/- | 22387 | 21887 | 501 | 166 | hypothetical protein EpSSL_gp33 [Enterobacteria phage] | YP_002720072.1 | 2E-22/43 | [+] | [+] |
| 30/- | 23550 | 22450 | 1065 | 353 | phage structural protein [Enterobacteria phage] | YP_002720073.1 | 1E-65/59 | [+] | [+] |
| 31/- | 24306 | 23638 | 669 | 222 | hypothetical protein EpSSL_gp36 [Enterobacteria phage] | YP_002720075.1 | 1E-39/50 | [+] | [+] |
| 32/- | 25520 | 24393 | 1128 | 375 | phage head morphogenesis protein [Enterobacteria phage] | YP_002720086.1 | 2E-123/58 | [+] | [+] |
| 33/- | 26964 | 25504 | 1461 | 486 | phage structural protein [Enterobacteria phage] | YP_002720085.1 | 1E-153/57 | [+] | [+] |
| 34/- | 28358 | 26976 | 1383 | 460 | phage terminase large subunit [Enterobacteria phage] | YP_002720084.1 | 4E-162/64 | [+] | [+] |
| 35/- | 28855 | 28358 | 498 | 165 | gp1 [Sodalis phage] | YP_003344936.1 | 2E-24/48 | [+] | [+] |
| 36/- | 29356 | 29090 | 267 | 88 | endolysin [Yersenia Phage PY100] | CAJ28446.1 | 7E-14/48 | [+] | [+] |
| 37/- | 29775 | 29500 | 276 | 91 | prophage Lp2 protein 33 [Streptococcus pneumonia] | ZP_01821446.1 | 2E-09/45 | [+] | [+] |
| 38/- | 30311 | 29826 | 486 | 161 | putative lysis accessory protein [Escherichia phage] | YP_512284.1 | 1E-10/39 | [+] | [+] |
| 39/- | 30559 | 30308 | 381 | 127 | Putative holin [Burkholderia multivorans CGD1] | ZP_03586913.1 | 5E-05/30 | [+] | [+] |
| 40/- | 30996 | 30775 | 222 | 73 | None | [+] | [+] | ||
| 41/- | 31670 | 31026 | 645 | 214 | None | [+] | [+] | ||
| 42/- | 32769 | 32128 | 642 | 213 | Conserved phage protein [Enterobacteria phage] | ADE87955.1 | 2E-27/37 | [+] | [+] |
| 43/- | 33112 | 32882 | 231 | 76 | None | [+] | [+] | ||
| 44/- | 35397 | 33988 | 1410 | 469 | phage replicative helicase/primease [Enterobacteria phage] | YP_002720055.1 | 7E-114/58 | [+] | [+] |
| 45/+ | 35764 | 36093 | 330 | 109 | None | [+] | [+] | ||
| 46/+ | 36115 | 36282 | 168 | 55 | None | [+] | [+] | ||
| 47/- | 36455 | 36339 | 117 | 38 | None | [+] | [+] | ||
| 48/+ | 36834 | 37277 | 444 | 147 | gp46 [Sodalis phage] | YP_003344981.1 | 5E-04/36 | [-] | [+] |
| 49/+ | 37326 | 37862 | 537 | 178 | gp27 [Sodalis phage] | YP_003344962.1 | 5E-04/40 | [+] | [+] |
| 50/+ | 37865 | 38098 | 234 | 77 | None | [-] | [+] | ||
| 51/+ | 38101 | 39360 | 1194 | 396 | gp43 [Sodalis phage] | YP_003344978.1 | 9E-49/50 | [+] | [+] |
| 52/+ | 39455 | 40192 | 738 | 245 | gp41 [Sodalis phage] | YP_003344976.1 | 4E-56/64 | [+] | [+] |
| 53/+ | 40252 | 42459 | 2208 | 735 | DNA polymerase I [Enterobacteria phage] | YP_002720046.1 | 0.0/64 | [+] | [+] |
| 54/+ | 42470 | 42748 | 279 | 92 | gp36 [Sodalis phage SO-1] | YP_003344971.1 | 1E-22/60 | [+] | [+] |