Table 1. A comparative overview of Ty3/gypsy complement composition between chromosome arms of the AgamP3 assembly.

Arm region	LTRrs sequence (bp)	% of region	Number of insertions	Insertions per Mb	Insertions in clusters	Arm size (Mb)
2L	553,250	1.12	169	3.42	64	49.36
2R	554,625	0.90	187	3.04	48	61.55
3L	428,819	1.02	156	3.72	56	41.96
3R	342,671	0.64	156	2.93	24	53.20
X	487,729	2.00	138	5.67	54	24.40
Total	2,367,094	1.03	806	3.50	246	230.47
TotalUNK	3,462	-	4	-	2	0.86

For each chromosome arm column 2 shows the total base pairs of Ty3/gypsy LTRrs and column 3 the % of each arm they represent. Columns 4 and 5 show the total number of insertions and the number of insertions per Mb of each region, respectively. Column 6 shows the number of insertions located 10 kb of each other. Finally, column 7 gives the total size of the chromosome region being analyzed. Last row (Total_UNK) shows the information related to insertions located in euchromatin-heterochromatin intermediate regions that were not classified into the specific chromatin types showed in Tables 2 and 3.