Table 1. A comparative overview of Ty3/gypsy complement composition between chromosome arms of the AgamP3 assembly.
Arm region | LTRrs sequence (bp) | % of region | Number of insertions | Insertions per Mb | Insertions in clusters | Arm size (Mb) |
2L | 553,250 | 1.12 | 169 | 3.42 | 64 | 49.36 |
2R | 554,625 | 0.90 | 187 | 3.04 | 48 | 61.55 |
3L | 428,819 | 1.02 | 156 | 3.72 | 56 | 41.96 |
3R | 342,671 | 0.64 | 156 | 2.93 | 24 | 53.20 |
X | 487,729 | 2.00 | 138 | 5.67 | 54 | 24.40 |
Total | 2,367,094 | 1.03 | 806 | 3.50 | 246 | 230.47 |
TotalUNK | 3,462 | - | 4 | - | 2 | 0.86 |
For each chromosome arm column 2 shows the total base pairs of Ty3/gypsy LTRrs and column 3 the % of each arm they represent. Columns 4 and 5 show the total number of insertions and the number of insertions per Mb of each region, respectively. Column 6 shows the number of insertions located 10 kb of each other. Finally, column 7 gives the total size of the chromosome region being analyzed. Last row (TotalUNK) shows the information related to insertions located in euchromatin-heterochromatin intermediate regions that were not classified into the specific chromatin types showed in Tables 2 and 3.