Table 2.
IPI | PEPPI_KB | PEPPI_without_SNP | PEPPI_with_SNP | |
---|---|---|---|---|
Size (M) | 47 | 115.2 | 1181.1 | 1769.7 |
Elapsed Time(h:mm:ss) | 0:11:05 | 0:10:39 | 1:02:32 | 1:33:04 |
MS2 FDR | 0.01000 | 0.00992 | 0.00996 | 0.00999 |
Target MS2 hits | 22685 | 21473 | 68137 | 116363 |
Decoy MS2 hits | 114 | 107 | 341 | 584 |
Peptide FDR | 0.01575 | 0.01527 | 0.01242 | 0.01571 |
Target peptide hits | 125 | 129 | 159 | 188 |
Decoy peptide hits | 2 | 2 | 2 | 3 |
Protein/gene FDR | 0.02797 | 0.02778 | 0.02439 | 0.02339 |
Target protein/gene hits | 368/141 | 142 | 162 | 169 |
Decoy protein/gene hits | 5/2 | 2 | 2 | 2 |
PEPPI FDR | 0.01376 | 0.01283 | 0.01376 | |
Target PEPPI hits | 433 | 1549 | 2886 | |
Decoy PEPPI hits | 3 | 10 | 20 |