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. 2010 Nov 29;77(3):1101–1106. doi: 10.1128/AEM.01481-10

TABLE 1.

Habitats and broader categories included in UniFrac P analysesa

Category Habitat No. of sequences
Chitinase genes 16S rRNA genes
Salinity Freshwater 20 30
Estuarine 14 34
Marine 166 310
Hypersaline 19 30
Latitude Tropic climate zone (23.5°N to 23.5°S) 112 137
Nontropic climate zone (>23.5°N, >23.5°S) 111 166
Coastal/open ocean Coastal 46 147
Open ocean 120 156
Geographic Caribbean Sea 20 50
    locationb Galapagos Islands 61 88
Indian Ocean 28 95
North American East Coast 16 54
Sargasso Sea 86 44
a

With the exception of the category for geographic location, only coastal and open ocean samples were included to represent marine samples in the analyses. The number of sequences included in each habitat is listed for the chitinase and 16S rRNA gene. These habitats were based only on planktonic samples (filter size, <0.8 μm) of group A chitinases. Habitats with fewer than 10 chitinase genes were excluded from further analyses to avoid spurious results. The habitats were further grouped into categories. Samples from a mangrove environment were grouped together with estuarine samples since satellite pictures from the Google Earth software tool (version 4.3.7204.0836 [beta]) show freshwater intrusion at this site. To avoid the influence of special marine habitats, such as reef samples, only coastal and open ocean samples were included in the respective habitats for salinity, latitude, and proximity to the coastline. However, we included sequences from all marine planktonic samples in habitats within the geographic location category, since too few sequences remained for the single categories.

b

Only sites with at least 10 chitinase sequences were included.