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. 2010 Nov 29;79(2):708–715. doi: 10.1128/IAI.01102-10

TABLE 1.

Primer sequences, product sizes, and melting temperatures used for q-RT-PCR of designated target genes

Genea GenBank accession no. Primer sequence (5′→3′) Product size (bp) Product Tmb
HPRT NM_001003357 CGC TGA GGA TTT GGA AAA AG 150 82.5
AAT CCA GCA GGT CAG CAA AG
TNF-α NM_001003244 TGC CTG CTG CAC TTT GG 125 84.0
GCT ACT GGC TTG TCA CTT GG
MMP-1 XM_546546 CGC GTA AAT CCC TTC TAT CC 157 80.5
CAT CCT GAC CCT GAA CAA CC
MMP-2 XM_535300 TGG AGC AAG AAC AAG AAG ACC 182 82.0 + 85.5
CCC TTG AAG AAG TAG CTA TGA CC
MMP-3 NM_001002967 ACA CCA GCT GCA TGT GAC C 123 82.0
GAA CCC AGG TTC AAG TGT CC
HS3ST3A1 XM_546631 TCA TCG GCG TGA AGA AGG 200 91.0
GCG GGT GAC AAA GTA ACT GG
IL-1β NM_001037971 CAG GAC ATA AGC CAC AAA TAC C 109 80.0
CAA AGC TCA TGT GGA ACA CC
HS2 XM_539153.2 TTC AGA CAC CAT GCT TGA CC 142 59.5
TCT CAC ACT GCT GAG GAA GG
a

HPRT, hypoxanthine phophoribosyltransferase, TNF-α, tumor necrosis factor alpha; MMP-1, matrix metalloproteinase 1; MMP-2, matrix metallopeptidase 2; MMP-3, matrix metallopeptidase 3; HS3ST3A1, heparan sulfate d-glucosaminyl 3-O-sulfotransferase 3A1; IL-1β, interleukin-1β; HS2, hyaluronan synthase 2.

b

Tm, melting temperature.