Table 2.
Homology of 56kDa gene nucleotide sequences among Orientia tsutsugamushi strains
| CUH 4-134 | CUH 4-485 | CUH 4-271 | CUH 4-3 | CUH 4-6 | CUH 4-117 | CUH 4-57 | CUH 4-31 | CUH 4-142 | CUH 4-324 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Hirahata | 90.6 | 90.9 | 99.1 | 70.8 | 71 | 71.5 | 69.4 | 69.6 | 69.6 | 69.6 |
| Mori | 89.7 | 90 | 97.9 | 70.1 | 70.3 | 70.5 | 69.2 | 69.4 | 69.4 | 69.4 |
| Kamimoto | 89.7 | 90 | 97.9 | 70.1 | 70.3 | 70.5 | 69.2 | 69.4 | 69.4 | 69.4 |
| Okazaki | 89.7 | 90 | 97.9 | 70.1 | 70.3 | 70.5 | 69.2 | 69.4 | 69.4 | 69.4 |
| Jecheon | 90.6 | 90.9 | 100 | 70.3 | 70.5 | 71.2 | 69.2 | 69.4 | 69.4 | 69.4 |
| Karp | 91.1 | 91.3 | 99.1 | 70.5 | 70.8 | 71.2 | 69.9 | 70.1 | 70.1 | 70.1 |
| Matsuzawa | 89.5 | 89.7 | 96.8 | 70.8 | 71 | 70.8 | 69.9 | 70.1 | 70.1 | 70.1 |
| Yeojoo | 91.1 | 91.3 | 98.6 | 71 | 71.2 | 70.8 | 69.2 | 69.4 | 69.4 | 69.4 |
| Yongworl | 90.6 | 90.9 | 93.6 | 71 | 71.2 | 71.2 | 69.9 | 70.1 | 70.1 | 70.1 |
| Pajoo | 91.8 | 92 | 94.7 | 70.5 | 70.8 | 71.7 | 70.5 | 70.8 | 70.8 | 70.8 |
| LA-1 | 90.6 | 90.9 | 93.6 | 70.8 | 71 | 72.1 | 71 | 71.2 | 71.2 | 71.2 |
| Nishino | 98.2 | 98.4 | 90.1 | 72.2 | 72.4 | 71 | 69.9 | 70.1 | 70.1 | 70.1 |
| Boryong | 99.5 | 99.8 | 91.3 | 71.7 | 72 | 71.7 | 70.6 | 70.8 | 70.8 | 70.8 |
| Kuroki | 99.5 | 99.8 | 91.3 | 71.7 | 72 | 71.7 | 70.6 | 70.8 | 70.8 | 70.8 |
| Akita-7 | 73.2 | 73.5 | 72.3 | 99.5 | 99.8 | 75.6 | 75.6 | 75.4 | 75.4 | 75.4 |
| Omagari | 73.5 | 73.7 | 72.5 | 99.8 | 100 | 75.8 | 75.8 | 75.6 | 75.6 | 75.6 |
| Kato | 73.5 | 73.7 | 72.5 | 99.8 | 100 | 75.8 | 75.8 | 75.6 | 75.6 | 75.6 |
| LF-1 | 73.9 | 74.2 | 73.2 | 94.6 | 94.8 | 78.9 | 77.2 | 77 | 77 | 77 |
| Kanda | 74.5 | 74.7 | 73.5 | 78.1 | 78.3 | 91.7 | 99.8 | 99.5 | 99.5 | 99.5 |
| Kawasaki | 74.5 | 74.7 | 73.5 | 78.1 | 78.3 | 91.7 | 99.8 | 99.5 | 99.5 | 99.5 |
| Oishi | 74.7 | 74.9 | 73.7 | 77.9 | 78.1 | 92 | 99.5 | 99.8 | 99.8 | 99.8 |
| Taguchi | 74.7 | 74.9 | 73.7 | 77.9 | 78.1 | 92 | 99.5 | 99.8 | 99.8 | 99.8 |
| Neimeng-65 | 76.2 | 76.4 | 76.2 | 78.6 | 78.8 | 99.8 | 92.2 | 92.5 | 92.5 | 92.5 |
| Gilliam | 76.4 | 76.6 | 76.4 | 79.1 | 79.3 | 99.3 | 91.7 | 92 | 92 | 92 |
| Ikeda | 73.2 | 73.5 | 73.2 | 77.9 | 78.1 | 94.2 | 91.2 | 91 | 91 | 91 |
| Iwataki-1 | 73.2 | 73.5 | 73.2 | 77.9 | 78.1 | 94.2 | 91.2 | 91 | 91 | 91 |
| Yonchon | 73.2 | 73.5 | 73.2 | 77.9 | 78.1 | 94.2 | 91.2 | 91 | 91 | 91 |
| Shimokoshi | 81 | 81.2 | 80.5 | 74.8 | 74.8 | 74.1 | 74.3 | 74.6 | 74.6 | 74.6 |
| Fuji | 74.5 | 74.7 | 72.1 | 70.2 | 70.4 | 70.2 | 71.2 | 70.9 | 70.9 | 70.9 |
| LX-1 | 75.5 | 75.8 | 74.1 | 69.9 | 70.2 | 66.9 | 67.4 | 67.6 | 67.6 | 67.6 |
| TA678 | 74.1 | 74.3 | 71.8 | 72.7 | 72.9 | 68.5 | 67.6 | 67.8 | 67.8 | 67.8 |
| TA763 | 78.3 | 78.6 | 75.2 | 73.8 | 74 | 73.8 | 73.6 | 73.3 | 73.3 | 73.3 |
| TA686 | 78.5 | 78.8 | 74.9 | 67.6 | 67.8 | 66.9 | 67.6 | 67.4 | 67.4 | 67.4 |
| TA716 | 76.5 | 76.7 | 73.4 | 76.5 | 76.7 | 69.5 | 69.1 | 69.3 | 69.3 | 69.3 |