Table 2. Predicted distribution of genes and proteins in Psg draft genomes.
Comparisons | Total genes | BLAST | Conserved genes# | Specific genes# | Other genes # | No. of SI** | SI Size (kb)** |
B076 versus Race 4 | 5578 | N | 4986 | 485 | 107 | 42 | 481.7 |
P | 4934 | 541 | 103 | 51 | |||
Race 4 versus B076 | 5209 | N | 4944 | 190 | 75 | 23 | 217.7 |
P | 4916 | 233 | 60 | 21 | |||
B076 versus 9 genomes* | 5578 | N | 1250 | 374 | 3954 | 29 | 405.3 |
P | 2168 | 394 | 3016 | 31 | |||
Race 4 versus 9 genomes* | 5209 | N | 1251 | 245 | 3713 | 25 | 297 |
P | 2166 | 252 | 2791 | 24 |
: Conserved, specific and other genes refer to genes with homology value (H-value) more than 0.81, less than 0.42, and between 0.42 and 0.81, respectively. A gene being conserved indicates that H-value exceeds the threshold in both or all genomes compared.
*: nine genomes refer to Pph 1448A, Pae 2250, Psv NCPPB 3335, Pta ATCC 11528, Psy B728a, Psy FF5, Pto DC3000, Pto T1 and Por 1–6 as described in Figures 6 and 7.
**SI: Specific islands refer to strain-specific genomic regions with more than 3 predicted genes (3 kb). ND: not determined.