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. 2011 Feb;12(2):116–125. doi: 10.1631/jzus.B1000278

Table 1.

Predicted precursor genes and potential targets of detected tomato miRNAs and miRNA*s

Genea Predicted precursorb Gene ID Predicted target gened
sly-miR156d sly-MIR156dc LE_HBa0125A23_SP6_300719 SPL2 (SGN-U#324312)
sly-miR156a–c sly-MIR156b C02HBa0194N24.1 SPL3 (SGN-U#317176)
sly-miR156a–c sly-MIR156c C02SLe0022J22.1 SPL3 (SGN-U#317176)
sly-miR159 sly-MIR159 C03HBa0029M12.1 GAMyb-like1 (EF175474)
sly-miR162 sly-MIR162 SL_EcoRI0035M01_T7_295421
sly-miR166a sly-MIR166a C06HBa0073H07.1 REV (SGN-U#321033)
sly-miR166b/sly-miR166b* sly-MIR166b C08HBa0005L01.1 REV (SGN-U#321033)
sly-miR167 sly-MIR167 C06HBa0028D14.1 ARF8 (SGN-U#327976)
sly-miR168/sly-miR168* sly-MIR168c C12HBa0067C22.2 AGO1 (SGN-U#338285)
sly-miR171a sly-MIR171a C02HBa0060J03.2 SCL6 (SGN-U#333058)
sly-miR171b/sly-miR171b* sly-MIR171b C02HBa0167J21.2 SCL6 (SGN-U#333058)
sly-miR171c/sly-miR171c* sly-MIR171c C12HBa0090D09.1 SCL6 (SGN-U#333058)
sly-miR171d sly-MIR171d C12HBa0146I19.1 SCL6 (SGN-U#333058)
sly-miR319 sly-MIR319 LE_HBa0015P16_SP6_130147 TCP (SGN-U#324434)
sly-miR396/sly-miR396* sly-MIR396c C12HBa0211M21.1 Transcription activator GRL1 (SGN-U#323341)
sly-miR403 sly-MIR403 SL_EcoRI0010F07 PAZ domain-containing protein (SGN-U#315036)
sly-miR390 C07HBa0229H10.2 PP2C (SGN-U#325391)
sly-miR164 C07HBa0179K09.1 CUC2 (SGN-U#326326)
a

The miRNA/miRNA* sequences are indicated in Table S3 and Fig. S1

b

The predicted precursor structures are indicated in Fig. S1

c

Precursor genes that are first predicted in this study

d

SPL: squamosa promoter-binding protein-like; REV: homeodomain-leucine zipper protein Revoluta; ARF: auxin-responsive factor; AGO: argonaute protein; SCL: scarecrow-like transcription factor; PP2C: protein phosphatase 2C; CUC2: cup-shaped cotyledon CUC2

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