Table 1.
Sum of TM-score for the highest ranked models in CASP8 (using a subset of 90 comparable models) and CASP9 (108 targets released in November 2010)
| Method | CASP8 |
CASP9 |
||||
|---|---|---|---|---|---|---|
| Easy | Hard | All | Easy | Hard | All | |
| PconsM | 50.1 | 8.8 | 58.9 | 56.3 | 9.2 | 65.5 |
| Pcons | 48.8 | 8.6 | 57.4 | 55.2 | 9.0 | 64.2 |
| HHpred | 46.4 | 6.9 | 53.3 | 54.0 | 6.7 | 60.7 |
| Fugue | 45.4 | 7.4 | 52.8 | 50.6 | 6.8 | 57.4 |
| SAM-T02 | 46.2 | 7.4 | 53.6 | 47.9 | 6.7 | 54.6 |
The results using the top ranking alignments from HHpred, Fugue and SAM-T02 were included as these were the highest performing single predictors used by Pcons.net. It should be noted that for some of the methods the predictions submitted to CASP were clearly better than the ones available locally for Pcons.net.