Table 2.
SNP | Gene | Chr | Pos (bp) | Function | Allele | MAF | B | Z | p | FDR |
---|---|---|---|---|---|---|---|---|---|---|
rs11575551 | DDC | 7 | 50,493,757 | UTR-3’ | C | 0.03 | −3.266 | −2.756 | 0.006 | 0.006 |
rs11575522 | DDC | 7 | 50,502,889 | Intron | A | 0.05 | −2.185 | −2.581 | 0.010 | 0.013 |
rs11575542 | DDC | 7 | 50,498,481 | Missense | A | 0.05 | −2.125 | −2.512 | 0.012 | 0.019 |
rs11575543 | DDC | 7 | 50,498,363 | Intron | T | 0.05 | −2.170 | −2.506 | 0.012 | 0.025 |
rs3829897 | DDC | 7 | 50,597,258 | Intron | T | 0.42 | −0.896 | −2.456 | 0.014 | 0.031 |
rs7876027 | DBH | 9 | 135,504,360 | Intron | G | 0.07 | 1.688 | 2.335 | 0.020 | 0.038 |
rs174699 | COMT | 22 | 18,334,458 | Intron | C | 0.06 | −1.748 | −2.290 | 0.022 | 0.044 |
rs10278338 | DDC | 7 | 50,597,764 | Intron | T | 0.34 | −0.842 | −2.277 | 0.023 | 0.050 |
rs11575552 | DDC | 7 | 50,493,740 | UTR-3’ | C | 0.02 | −3.118 | −2.250 | 0.024 | 0.056 |
rs933271 | COMT | 22 | 18,311,407 | Intron | C | 0.32 | −0.827 | −2.127 | 0.033 | 0.063 |
rs12669770 | DDC | 7 | 50,597,382 | Intron | A | 0.33 | −0.732 | −1.984 | 0.047 | 0.069 |
rs2975284 | SLC6A3 | 5 | 1,485,552 | Intron | T | 0.01 | −2.902 | −1.970 | 0.049 | 0.075 |
Note. SNP = single nucleotide polymorphism in the regression equation; Gene = gene location of the SNP (see Table 1 for gene function descriptions); Chr = chromosome location of the SNP; Pos (bp) = position on the chromosome (in base pairs) of the SNP; Function = SNP function; UTR-3’ = SNP located in an untranslated region (UTR) at the 3’ end of the gene that may affect the stability, localization, and/or efficiency of messenger RNA (mRNA) translation of the gene; Intron = non-coding SNP; Missense = missense mutation, in which each allele produces a different amino acid; Allele = minor allele (i.e. less frequent nucleotide) for which the regression effect, B, is reported; MAF = minor allele frequency; B = regression coefficient for the effect of the SNP; Z = z-score for the regression coefficient (calculated as B / std.error(B)); p = two-tailed p-value for B; FDR = False Discovery Rate (see Equation 1 in text).