Table 3.
Model | SNPs | R2 | ΔR2 | −2LL | df | p | AIC | BIC |
---|---|---|---|---|---|---|---|---|
1. Covariates only | 0 | 27.9% | 4113.0 | 8 | 4129.0 | 4164.7 | ||
2. All significant SNPs | 12 | 31.7% | 3.9% | 4027.5 | 20 | < 4 × 10−13 | 4067.5 | 4156.5 |
Note. SNPs = number of single nucleotide polymorphisms included in the model; R2 = proportion of variance in the dependent variable explained by the covariates and any SNPs included in that regression model; ΔR2 = additional variance explained by adding SNPs (model 2) to the covariate model (model 1); −2LL = −2 times the log-likelihood of the regression model; df = degrees of freedom in the regression model; p = the p-value when comparing model 2 to model 1, estimated by the change in −2LL on a chi-square distribution with df equal to the difference in dfs between the models; AIC = Akaike’s Information Criterion, where lower values indicate better model fit to the data; BIC = Bayesian Information Criterion, where lower values indicate better model fit to the data.