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. Author manuscript; available in PMC: 2012 Mar 1.
Published in final edited form as: Dev Comp Immunol. 2010 Nov 11;35(3):352–359. doi: 10.1016/j.dci.2010.10.010

Table 4.

Predicted transcription factor binding sites in the Eζi enhancer

Factor [Accession#]a 5′ start in the Eζi enhancer Observed motifb
c-Ets-1 [T00112] 163 TAGGAAG
Oct 2 [T00648] 230 ATGCAAAcAAT
Oct 2 [T00648] 523 ATGCAAAAAAG
Oct 2 [R02226] 558 ATTTtCAT
PU.1 [R02238] 575 TTCCTC
c-Ets-1 [T00112] 573 TTTCCTC
Oct 2 [R02226] 682 ATGCcAAT
E47 [T05421] 741 ACAGGTGCACc
Oct 2 [R02226] 754 ATaTGCAT
Oct 2 [R02226] 941 tTGCAAAT
c-Ets-1 [T00112] 1220 TAGGAAA
c-Ets-1 [T00112] 1449 GTGGAAA
c-Ets-1 [T00112] 1459 TTTCCAA
Oct 2 [R02226] 1537 ATGaAAAT
c-Ets-1 [T00112] 1581 CTTCCAG
muEBP-C2 [T00215] 1750 CACATG
TFE3 [R02139] 1817 CACTTG
E47 [T00207] 1815 cCATCTG
c-Ets-1 [T00112] 1879 TTGGAAA
Oct 2 [R02226] 1924 AcGCAAAT
TFE3 [R02139] 1929 GCAACTGTG
muEBP-C2 [T00215] 2114 CACATG
Oct 2 [R02226] 2118 ATGCAAAa
YY1 [T00278] 2359 CCATCCT
c-Ets-1 [T00112] 2441 TTTCCAA
a

Accession numbers in Transfac database

b

small letters are non-canonical nucleotides in the enhancer sequence

c

bold letters are motifs whose core has been shown to be functional in fish